Craig J Benham

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Molecular Type: linear dna circular dna

Energetic Type: near neighbor copolymeric

Energy Cutoff:

Name the sequence:

DNA Sequence*: copy and paste your sequence in the below area:

1 	CCCATTCGCC ATTCAGGCTG CGCAACTGTT GGGAAGGGCG ATCGGTGCGG 	
51 	GCCTCTTCGC TATTACGCCA GCTGGCGAAA GGGGGATGTG CTGCAAGGCG 	
101 	ATTAAGTTGG GTAACGCCAG GGTTTTCCCA GTCACGACGT TGTAAAACGA 	
151 	CGGCCAGTGC CAAGCTTGCA TGCCTGCAGG TCGACTCTAG AGGATCCCCG 	
201 	GGTACCGAGC TCGAATTCAG ATCTCTCAGA GTTTCTGATA TTTCATATGG 	
251 	AGCCTTAGAA TGTGTTTATA GCTGGACACA TTGCCTCTGT TAATAAGGAA 	
301 	AACAAAGAAA TACAGAATGG GTAATAGTTA TAAAAACAGC TGCAGCAATA 	
351 	TCCAACAAAA TACGGGAGAA AAGAGGAGAG GTGGAAAGTG ATATAAATAA 	
401 	ACTATAGTTA GAACATGAAG TCAAAAGCTA TAGTCTAAAT TGGTAAATCA 	
451 	ATAAGGATTT TGGTACATTA TGTAGATTTA CATGGTTTAT AATAAATGGC 	
501 	AAAAGAAAAG AAACAAAACG AAAAACAAGT TGCTTCCGTA GATTGGAAGT 	
551 	AGGGACGGAA AAGTGAGAAA GAATGTTTTT TCATTTAATT GCATTGTATA 	
601 	AATCTTTCTT ACACTTGTGC ATGTGATGCA GTAATAACTG TAGAGAGAAG 	
651 	AATGTGAGCT TGTTTTTGTA CTTCAGGCAG GTGAAACAGG ATGGAATTGT 	
701 	TACAAGTGTA CCTAACATCA GTATTGAACA CATAGTATTT GTGAATAAAA 	
751 	AAATTTATTT ATAAAACAAT TTTTAATAAA AGTAAAACTA AATATCTGCA 	
801 	AACTCCAAAA AAAATTAAAA AGGAGAGAAG AAGAAGAATC ACAAAAAGTG 	
851 	ACCAATGTTA GAATATCTGG CACTCTTCCA TTTGGTGAGA GCCAGCCAGT 	
901 	ACTTTTGATC AGTGCCTGGT CTAGGTTGGA AAGAAACTAA TTTCTTCTGA 	
951 	GTCAATAAAG TCAGTACCTT TAATGTTCTT TCTTCTCAGG TTTCCCATCT 	
1001 	ATAAATGAGA ATAAGAATAT CCCTTGTAAA TTTATTTCAG AGAGATTGCT 	
1051 	TTTTAGAAAA GTGTAGGAAT CTGTGTCAAA CATCAATTAG CTTTGAAAAG 	
1101 	CAACCAATAG TCATTGACTC CATGCTTTAG AAATAACAAG CACCCAACAT 	
1151 	TAGTATAAAA AAATGCATTG GAATGCAAAA TAATATAATT TTCATATTAT 	
1201 	ATTATTCTAG ATATTCAAAT ATTTAGCAAT TGGTATGATA GTGGAGGGCA 	
1251 	GCAGAAAACA AGGCTGCCAA AAGCCTTAAA ACTATATTCC CTTTGATTCA 	
1301 	GCAATTCATT TTCTAGTATT TTGTCCTAAG GAAATAATTA GACAAATTTT 	
1351 	CCTTTTTGTT GTTTTGTTTT GTTTTGTTTT CTTTGACATT GTTTTCCTTT 	
1401 	TTCTTTTTAA TTATACTTTA AGTTTTAGGG TACATGTGCA CAACGTGCAG 	
1451 	GTTAGTTACA TATGTATACA TTGCCATGTT GGTGTGCTGC ACCCATTAAC 	
1501 	TCATCATTTA ACATTAGGTG TATCTCCTAA TGCTATCCCT ACCCCCTCCC 	
1551 	CCAACCCCAC AACAGGCCCC AGTGTGTGAT GCTCCCCTTC CTGTGTCCAT 	
1601 	GTGTTCTCAC TGTTCAATTC CCACCTATGA GTGAGAACAT GTGGTGTTTG 	
1651 	GTTTTTTGTC CTTGCGATGG TTTGCTGAGA ATGATGGTTT CCATCTTCAT 	
1701 	CCATGTCCCT ACAAAGGACA TGAACTCATC CTTTTTCATG GCTGCATAAT 	
1751 	ATTCCACGGT GTATATGTGC CACATTTTCT TAATCCAGTC TATCATTGTT 	
1801 	GGACATTTGG GTTGGTTCCA AGTCTTTGCT ATTGTGAATA GTGCCGCAAT 	
1851 	AAACATACGT GTGCATGTGT CTTTATAGCA GCATGATTTA TAATCCTTTA 	
1901 	GGTATATAGC CAGTAATGGG ATTGCTGGGT CAAATGGTAT TTCTAGTTCT 	
1951 	AGATCCCTGA GCAATCACCA CACTGACTTC CACAATGGTC GAACTAGTTT 	
2001 	ACAGTCCCAC CAACAGTGTA AAAGTGTTCC TATTTCTCCA CATCCTCTCC 	
2051 	AGCACCTGTT GTTTCCTGAC TTTTTAATGA TCGCCATTCT AACTGGTGAG 	
2101 	AGATGGTATC TCATTGTGGT TTTGATTTGC ATTTCTCTGA TGGCCAGTGA 	
2151 	TGATGAGCAT TTTTTCATGT GTCTTTTGGC TGCATAAATG AATTAGACAC 	
2201 	ATTTTCAAAA GGTGTTATAC AAGGGTGTCT ATTGGTTCAG ACTTTGTAAA 	
2251 	CACTCCAAAT TTAGGAGAAA AACATACATT TCTAACCTTC GAAGGTTAAT 	
2301 	TTTTAAAATT ATGCTAATAA AAATTATACT AATTAAGAAA AATTATGCTA 	
2351 	GATTTCTGTG TGTTGACTCA GAAAGTATTC CATAGCCAAC ATATTGTTAA 	
2401 	GTGACAGAGA TACATTCTAA ACAATATGCA TAATATAACC CCATTTTGTG 	
2451 	GGAAAATCCA TACATATATG AATAGAAAAG AGCCTAGAAT TTAATATATA 	
2501 	AAAATAGTAA GGTAAAAATC TGAGTGATAA ATTTGTGAAT GAATTTTCTT 	
2551 	CTTTGTATTT TTTCTGAATA TGGTACCACC TTTCAGAGCA GGTAATGATT 	
2601 	TTTCCATTCA TGTAGTAATA ATAAAGCTAT CTCAGTTTTA AGGACTGAAA 	
2651 	TATATTGTCT CCAATCCCTA TCACAATCCT AATGAGTCAT TTGCTCTCGC 	
2701 	TGTATCGTGA CATTCCATTT ACTACACAAT GTCCCTGACA ACAAGATAAC 	
2751 	TGAGAACATG AGCATAAGCT CTATTTGATA TAGTTATAAG CCTAAACTTA 	
2801 	ATTTCTGAGA ATCACATAAT GATACTACTT TACACCTTGA TGTAATTTTA 	
2851 	AAGTATAATT ACTCACTCAT AAGCCTATAT CATTAGTAGA AAATGCACCA 	
2901 	GATTGGGATT TAGGAGGCTT CAGTACCTTT CCCTTCTTTG CTGCTGGCTC 	
2951 	ATTTGGGCAA ATCGTTCTAC AGGATTTCTT AGGGGCCCAT TGGGGATTTC 	
3001 	AGAGGCTTGA GCCTATGTGA TTTTTACTTC TATCACTCAA AGTTTTAATG 	
3051 	TTTTATCTGG TTTCTATCTC TCTTTAAGAT TATAAGGGAA TGTAAAGGAC 	
3101 	TTTTCCTGCT GGAGAATTCC CTATAGTGAG TCGTATTAAA TTCGTAATCA 	
3151 	TGGTCATAGC TGTTTCCTGT GTGAAATTGT TATCCGCTCA CAATTCCACA 	
3201 	CAACATACGA GCCGGAAGCA TAAAGTGTAA AGCCTGGGGT GCCTAATGAG 	
3251 	TGAGCTAACT CACATTAATT GCGTTGCGCT CACTGCCCGC TTTCCAGTCG 	
3301 	GGAAACCTGT CGTGCCAGCT GCATTAATGA ATCGGCCAAC GCGCGGGGAG 	
3351 	AGGCGGTTTG CGTATTGGGC GCTCTTCCGC TTCCTCGCTC ACTGACTCGC 	
3401 	TGCGCTCGGT CGTTCGGCTG CGGCGAGCGG TATCAGCTCA CTCAAAGGCG 	
3451 	GTAATACGGT TATCCACAGA ATCAGGGGAT AACGCAGGAA AGAACATGTG 	
3501 	AGCAAAAGGC CAGCAAAAGG CCAGGAACCG TAAAAAGGCC GCGTTGCTGG 	
3551 	CGTTTTTCCA TAGGCTCCGC CCCCCTGACG AGCATCACAA AAATCGACGC 	
3601 	TCAAGTCAGA GGTGGCGAAA CCCGACAGGA CTATAAAGAT ACCAGGCGTT 	
3651 	TCCCCCTGGA AGCTCCCTCG TGCGCTCTCC TGTTCCGACC CTGCCGCTTA 	
3701 	CCGGATACCT GTCCGCCTTT CTCCCTTCGG GAAGCGTGGC GCTTTCTCAT 	
3751 	AGCTCACGCT GTAGGTATCT CAGTTCGGTG TAGGTCGTTC GCTCCAAGCT 	
3801 	GGGCTGTGTG CACGAACCCC CCGTTCAGCC CGACCGCTGC GCCTTATCCG 	
3851 	GTAACTATCG TCTTGAGTCC AACCCGGTAA GACACGACTT ATCGCCACTG 	
3901 	GCAGCAGCCA CTGGTAACAG GATTAGCAGA GCGAGGTATG TAGGCGGTGC 	
3951 	TACAGAGTTC TTGAAGTGGT GGCCTAACTA CGGCTACACT AGAAGGACAG 	
4001 	TATTTGGTAT CTGCGCTCTG CTGAAGCCAG TTACCTTCGG AAAAAGAGTT 	
4051 	GGTAGCTCTT GATCCGGCAA ACAAACCACC GCTGGTAGCG GTGGTTTTTT 	
4101 	TGTTTGCAAG CAGCAGATTA CGCGCAGAAA AAAAGGATCT CAAGAAGATC 	
4151 	CTTTGATCTT TTCTACGGGG TCTGACGCTC AGTGGAACGA AAACTCACGT 	
4201 	TAAGGGATTT TGGTCATGAG ATTATCAAAA AGGATCTTCA CCTAGATCCT 	
4251 	TTTAAATTAA AAATGAAGTT TTAAATCAAT CTAAAGTATA TATGAGTAAA 	
4301 	CTTGGTCTGA CAGTTACCAA TGCTTAATCA GTGAGGCACC TATCTCAGCG 	
4351 	ATCTGTCTAT TTCGTTCATC CATAGTTGCC TGACTCCCCG TCGTGTAGAT 	
4401 	AACTACGATA CGGGAGGGCT TACCATCTGG CCCCAGTGCT GCAATGATAC 	
4451 	CGCGAGACCC ACGCTCACCG GCTCCAGATT TATCAGCAAT AAACCAGCCA 	
4501 	GCCGGAAGGG CCGAGCGCAG AAGTGGTCCT GCAACTTTAT CCGCCTCCAT 	
4551 	CCAGTCTATT AATTGTTGCC GGGAAGCTAG AGTAAGTAGT TCGCCAGTTA 	
4601 	ATAGTTTGCG CAACGTTGTT GCCATTGCTA CAGGCATCGT GGTGTCACGC 	
4651 	TCGTCGTTTG GTATGGCTTC ATTCAGCTCC GGTTCCCAAC GATCAAGGCG 	
4701 	AGTTACATGA TCCCCCATGT TGTGCAAAAA AGCGGTTAGC TCCTTCGGTC 	
4751 	CTCCGATCGT TGTCAGAAGT AAGTTGGCCG CAGTGTTATC ACTCATGGTT 	
4801 	ATGGCAGCAC TGCATAATTC TCTTACTGTC ATGCCATCCG TAAGATGCTT 	
4851 	TTCTGTGACT GGTGAGTACT CAACCAAGTC ATTCTGAGAA TAGTGTATGC 	
4901 	GGCGACCGAG TTGCTCTTGC CCGGCGTCAA TACGGGATAA TACCGCGCCA 	
4951 	CATAGCAGAA CTTTAAAAGT GCTCATCATT GGAAAACGTT CTTCGGGGCG 	
5001 	AAAACTCTCA AGGATCTTAC CGCTGTTGAG ATCCAGTTCG ATGTAACCCA 	
5051 	CTCGTGCACC CAACTGATCT TCAGCATCTT TTACTTTCAC CAGCGTTTCT 	
5101 	GGGTGAGCAA AAACAGGAAG GCAAAATGCC GCAAAAAAGG GAATAAGGGC 	
5151 	GACACGGAAA TGTTGAATAC TCATACTCTT CCTTTTTCAA TATTATTGAA 	
5201 	GCATTTATCA GGGTTATTGT CTCATGAGCG GATACATATT TGAATGTATT 	
5251 	TAGAAAAATA AACAAATAGG GGTTCCGCGC ACATTTCCCC GAAAAGTGCC 	
5301 	ACCTGACGCG CCCTGTAGCG GCGCATTAAG CGCGGCGGGT GTGGTGGTTA 	
5351 	CGCGCAGCGT GACCGCTACA CTTGCCAGCG CCCTAGCGCC CGCTCCTTTC 	
5401 	GCTTTCTTCC CTTCCTTTCT CGCCACGTTC GCCGGCTTTC CCCGTCAAGC 	
5451 	TCTAAATCGG GGCATCCCTT TAGGGTTCCG ATTTAGTGCT TTACGGCACC 	
5501 	TCGACCCCAA AAAACTTGAT TAGGGTGATG GTTCACGTAG TGGGCCATCG 	
5551 	CCCTGATAGA CGGTTTTTCG CCCTTTGACG TTGGAGTCCA CGTTCTTTAA 	
5601 	TAGTGGACTC TTGTTCCAAA CTGGAACAAC ACTCAACCCT ATCTCGGTCT 	
5651 	ATTCTTTTGA TTTATAAGGG ATTTTGCCGA TTTCGGCCTA TTGGTTAAAA 	
5701 	AATGAGCTGA TTTAACAAAA ATTTAACGCG AATTTTAACA AAATATTAAC 	
5751 	AAAATATTAA CGTTTACAAT TT

Total length is 5772 bps, circular DNA.

Set Profile Type:

Output Control:
dna sequence states
parameter set ensemble quantities